This tool allows the analytic (i.e. without running a simulation) determination of stable states of the model. All stable states are determined, regardless of their reachability [1] .
This tool allows the analytic (i.e. without running a simulation) determination of trapspaces of the model. These trapspaces contain the stable states, as well as an approximation for complex attractors.
Usage
The stable state identification tool is available from the Compute stable states
option of the Tools menu.
The stable states dialog box allows to run the analysis after the optional
selection of a perturbation. The result is shown in a table in the same dialog box, allowing
to launch a novel analysis for another perturbation. A “” in the table denotes that
each of the values of this component gives rise to a stable state (or several if another
“” appears in the same row).
Availability
Stable state search was first implemented in GINsim 2.3. The implementation is now part of the bioLQM toolkit.